Articles describing KinFitSim (all versions):

  1. I.B. Svir, A.V. Klymenko, M.S. Platz. The KinFitSim package - a software package to fit kinetic data to any mechanism (in English). Management Information Systems and Devices. All-Ukr. Sci. Interdep. Mag., No. 116, 2001, pp. 24-38
  2. I.B. Svir, A.V. Klymenko, M.S. Platz. KinFitSim - a software package to fit kinetic data (in English). Radioelektronika i Informatika, No. 1, 2001, pp. 132-136
  3. I.B. Svir, A.V. Klymenko, M.S. Platz. "KinFitSim" - a software to fit kinetic data to a user selected mechanism. Computers and Chemistry, V. 26/4, 2002, p. 379-386
  4. A.V. Klymenko, I.B. Svir. Modelling of kinetic mechanisms for photochemical analysis (in Russian). Management Information Systems and Devices. All-Ukr. Sci. Interdep. Mag., No. 121, 2002, pp. 30-34
  5. I. Svir, O.V. Klymenko, A.I. Oleinick, M.S. Platz. KinFitSim (Version 2.1) - a powerful tool for kinetic simulation of any reaction mechanism and fitting of any number of pairs of theoretical and experimental data sets (in English). Radioelektronika i informatika, No. 4, 2004, pp. 21-24
  6. A.V. Klymenko. Algorithms for automatic numerical modelling of homogeneous chemical processes (in Russian). Radioelektronika i informatika, No. 3, 2004, pp. 42-47
  7. O.V. Klymenko, I. Svir. Modelling complex chemical processes in homogeneous solutions: automatic numerical simulation. Nonlinear Analysis: Modelling and Control, V. 11/3, 2006, pp. 247-261
  8. V.N. Shulyk, O.V. Klymenko, I.B. Svir. Numerical Solution of Stiff ODEs Describing Complex Homogeneous Chemical Processes. J. Mathematical Chemistry, V. 43, 2008, pp. 252-254


Articles describing applications of KinFitSim by its users:

  1. E. Tippmann, M. Platz, I. Svir, O. Klymenko. Evidence for specific solvation of two halocarbene amides. J. American Chemical Society, V.126, 2004, pp. 5750-5762
  2. J. Kulys. Kinetics of Biocatalytical Synergistic Reactions. Nonlinear Anal. Model. Control, V. 10, 2005, pp. 223-233
  3. D. Vineyard, J. Patterson-Ward, A.J. Berdis, I. Lee. Monitoring the Timing of ATP Hydrolysis with Activation of Peptide Cleavage in Escherichia coli Lon by Transient Kinetics. Biochemistry, V. 44, 2005, pp. 1671-1682
  4. I. Bratkovskaya, R. Ivanec, J. Kulys. Mediator-Assisted Laccase-Catalyzed Oxidation of 4-Hydroxybiphenyl. Biochemistry (Moscow), V. 71, 2006, pp. 550-554
  5. J. Kulys, Z. Dapkunas, The Effectiveness of Synergistic Enzymatic Reactions with Limited Mediator Stability. Nonlinear Anal. Model. Control, V. 12, 2007, pp. 495-501
  6. J. Patterson-Ward, J. Huang, I. Lee. Detection and Characterization of Two ATP-Dependent Conformational Changes in Proteolytically Inactive Escherichia coli Lon Mutants by Stopped Flow Kinetic Techniques. Biochemistry, V. 46, 2007, pp. 13593-13605
  7. P. Wardman. Chapter 14. Methods to Measure the Reactivity of Peroxynitrite‐Derived Oxidants Toward Reduced Fluoresceins and Rhodamines. Methods in Enzymology, V. 441, 2008, pp. 261-282
  8. M.R. Cline and J.P. Toscano. Detection of Nitroxyl (HNO) by a Prefluorescent Probe. J. Phys. Org. Chem., V. 24, 2011, pp. 993-998
  9. Canedo, M.M., González-Hernández, J.L. KINMODEL (AGDC): A multipurpose computational method for kinetic treatment.
    Journal of Mathematical Chemistry. V. 49(1), 2011, pp. 163-184.
  10. Canedo Alonso, M.M., González-Hernández, J.L., Encinar Del Dedo, S. Application the computational method KINMODEL(AGDC) to the simultaneous determination of kinetic and analytical parameters. Applied Mathematics and Computation. V. 219(12), 2013, pp 7089-7101.
  11. Tetianec, L., Chaleckaja, A.,Vidziunaite, R., Kulys, J., Bachmatova, I., Marcinkeviciene, L., Meskys, R. Development of a laccase/syringaldazine system for NAD(P)H oxidation. Journal of Molecular Catalysis B: Enzymatic, V. 101, 2014, pp. 28-34.
  12. Laurynėnas, A., Kulys, J. An exhaustive search approach for chemical kinetics experimental data fitting, rate constants optimization and confidence interval estimation. Nonlinear Analysis: Modelling and Control. V. 20(1), 2014, pp. 145-157.
  13. Oliveira, C.M., Jesus, C.D.F., Ceneviva, L.V.S., Silva, F.H., Cruz, A.J.G., Costa, C.B.B., Badino, A.C. Anabioplus: A new package for parameter estimation and simulation of bioprocesses. Brazilian Journal of Chemical Engineering. V. 34(4), 2017, pp. 1065-1082.
  14. González-Hernández, J.L., Canedo, M.M., Encinar, S. Application of a robust hybrid algorithm (Neural Networks-AGDC) for the determination of kinetic parameters and discrimination among reaction mechanisms. Match. V. 79(3), 2018, pp. 619-644.